scanpy-scripts

Depended on by

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)
fa2 (fa2)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)
fa2 (fa2)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)
fa2 (fa2)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)
fa2 (fa2)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy==1.8.1)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)
scikit-misc (scikit-misc)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.8.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.8.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.8.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.5.0)
mnnpy (mnnpy>=0.1.9.5)
scrublet (scrublet)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.6.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click<8)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12,<1.5.0)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.6.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.6.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.6.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<3.0.0)
scanpy (scanpy>=1.6.0)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

louvain (louvain)
packaging (packaging)
anndata (anndata)
scipy (scipy)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py)
scanpy (scanpy>=1.6.0)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)
umap-learn (umap-learn<0.4.0)
harmonypy (harmonypy>=0.0.5)
bbknn (bbknn>=1.3.12)
mnnpy (mnnpy>=0.1.9.5)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

packaging (packaging)
anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
h5py (h5py<2.10)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy>=2.0.0,<3.0.0)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

anndata (anndata<0.6.20)
scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2,<1.4.4)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)

Graph

Depends On

scipy (scipy>=1.2.0,<1.3.0)
matplotlib (matplotlib)
pandas (pandas)
scanpy (scanpy>=1.4.2)
louvain (louvain)
leidenalg (leidenalg)
loompy (loompy)
MulticoreTSNE (MulticoreTSNE)
Click (Click)